The radio chatter says everyone was killed, and they are right to believe that. We have no idea what the crew were up to while Shepard was half-dead on the Citadel. It's not entirely impossible that the others got picked up too. And how the crew is on the Normandy? Well, we know that Shepard called Joker to pick up the two squad mates she had with her just before Harbinger's final attack and her ascent to the Citadel. And I think that has to do with the upgrades I got in ME2. EDI had Reaper code installed, however, and it's entirely possible that he rushed to save her. The Normandy would be fine - but Joker didn't know that, did he. The beam wouldn't destroy all technology! Just self-aware synthetics. And I took the red beam that was supposed to destroy synthetics. My Normandy had some bumps a bruises, but no hull breach and no exploded engines. Why doesn't it make sense for Joker to try and outrun the mass relay explosion? It's an explosion! Anyone with half a mind would try to get away from an explosion! And no, the engines don't explode in all scenarios. She is extremely stressed out by the end of the game when that final dream sequence happens. Yes, you're in a dream! Have you ever had a dream where you moved normally? And as for getting hit by the Reaper beam - you just got hit by a high-tech friggin weapon of mass destruction! Of course you're gonna walk slowly! And the trees - since when do you look at trees so closely that you can tell individual trees apart? Honestly? And the burning is more like her subconcious telling her that she can't save everyone and if she tried she'd burn out. But they are not, proof of this comes later in the game. The guy in the video says that the oily shadows are the same oily shadows mentioned by the Rachni queen in ME1. And the dark shadows multiply as the game goes on, giving a hint that she blames herself for all the victims of the Reaper attacks that she could do nothing to save. The voice of the one of died on Virmire, the voices of any and all you lost in ME2, the voices of any you loose during the course of ME3. This, imo, becomes even more obvious as the game goes on and she starts to hear the voice of everyone she's lost while dreaming. I see these in a completely different light than the guy in the video, I see them as proof that Shepard blames herself for everyone she couldn't save.

Mass effect 3 indoctrination theory